Visualizations function in Template.Rmd

[ritahippe]

Most current commit: 031831a TO DO

• [x] Putting missing country correction code in ISCN_3 (fixedCountryLayerData)
• [x] Remove NA columns from study table
• [x] Fix if/else and assignment syntax
• [x] replace length() with ncol() or nrow()
• [x] Make variable of filter pipe and profile data
• [x] Removing last if/else is.na() and instead initiate variable at beginning of function with same message as a string
• [x] fix modification date in ISCN3 (Jorgenson_NPS needs it but what others?)

General

• [ ] Work through each dataset to make sure each run properly
• [ ] Lehmann Soil C&BC
• [ ] Lehmann NE US soils
• [ ] USGS Harden Yazoo
• [ ] USDA-FS NRS Landscape Carbon Inventory
• [ ] Permafrost_RCN
• [ ] USGS_S3C
• [ ] NRCS Sept/2014

[ritahippe]

Dataset List for verifying output of function; meant to be completed at end of process. Checked off datasets have been reviewed:

• [x] Heckman/Swanston Biscuit Burn
• [x] Lu_PIMA
• [x] Heckman lithosequence
• [x] Oak Ridge National Lab_Loblolly_DWJ
• [x] Lu_LTER
• [ ] Lehmann Soil C&BC #1 "no non-missing arguments to min; returning Infno non-missing arguments to max; returning -Infno non-missing arguments to min; returning Infno non-missing arguments to max; returning -InfError in plotGenerate(ISCN3, datasetName = "Lehmann Soil C&BC #1") : dims [product 1] do not match the length of object [5]"
• [x] Schuur
• [ ] Lehmann NE US soils "no non-missing arguments to min; returning Infno non-missing arguments to max; returning -Infno non-missing arguments to min; returning Infno non-missing arguments to max; returning -InfError in plotGenerate(ISCN3, datasetName = "Lehmann NE US soils") : dims [product 1] do not match the length of object [7]"
• [x] Vogel
• [x] Myers-Smith
• [x] USGS Muhs
• [ ] USGS Harden Yazoo adjust coords for both maps
• [x] Boby_Mack
• [x] Kane
• [x] Bonanza LTER
• [x] Jorgensen_YKDE
• [ ] UMBS_FASET ran fine - just verify 22 NA's in layer info for state column
• [x] Jorgensen_ARCN
• [x] Oak Ridge National Lab_TDE
• [x] USGS Harden
• [ ] USDA-FS NRS Landscape Carbon Inventory "no non-missing arguments to min; returning Infno non-missing arguments to max; returning -Infno non-missing arguments to min; returning Infno non-missing arguments to max; returning -InfError in plotGenerate(ISCN3, datasetName = "USDA-FS NRS Landscape Carbon Inventory") : dims [product 1] do not match the length of object [6]"
• [x] Bockheim
• [x] Jorgensen_NPS
• [ ] Permafrost_RCN "no non-missing arguments to min; returning Infno non-missing arguments to max; returning -Infno non-missing arguments to min; returning Infno non-missing arguments to max; returning -InfError in if (datasetCountry == "United States" & datasetState != "Alaska") { : missing value where TRUE/FALSE needed"
• [x] Northern Circumpolar Soil Carbon Database (NCSCD) Works fine, has Russian sites we were curious about
• [ ] USGS_S3C "the condition has length > 1 and only the first element will be usedError in plotGenerate(ISCN3, datasetName = "USGS_S3C") : dims [product 1] do not match the length of object [7]" ph_h2o in layer data has values: 56, 64. 87.1
• [x] AK DSC Project SOC stock computation
• [x] Worldwide soil carbon and nitrogen data Works fine, has more Russian sites that might be related to ones in NCSCD we were curious about
• [ ] NRCS Sept/2014 Won't print Depth plots - "Error: cannot allocate vector of size 105.4 Mb"

[ritahippe]

Went through comments @ktoddbrown left in 84c59e7 , could you look over it and see if there's anything else I should fix before going through each dataset?