Description of work
Updated the self-part of the van Hove function so that both $4 \pi r^2 G_s(r,t)$ and $G_s(r,t)$ are saved. Changed the normalization so that it is now consistent with the distinct part. The normalization of $4 \pi r^2 G_s(r,t)$ has been corrected.
Here I have plotted both the self and distinct part of the van Hove function on the same plot for the 0th and 20th time steps.
To test
Run the self-part of van Hove function and check the results, rebuild MDANSE as some cython was changed. Check the self-part van Hove function, there should now be two outputs with different normalizations. The $4 \pi r^2 G_s(r,t)$ output should be similar to the output from before. A new $G_s(r,t)$ should be available, normalized in the same way as the distinct part.
Description of work Updated the self-part of the van Hove function so that both $4 \pi r^2 G_s(r,t)$ and $G_s(r,t)$ are saved. Changed the normalization so that it is now consistent with the distinct part. The normalization of $4 \pi r^2 G_s(r,t)$ has been corrected.
Here I have plotted both the self and distinct part of the van Hove function on the same plot for the 0th and 20th time steps.
To test Run the self-part of van Hove function and check the results, rebuild MDANSE as some cython was changed. Check the self-part van Hove function, there should now be two outputs with different normalizations. The $4 \pi r^2 G_s(r,t)$ output should be similar to the output from before. A new $G_s(r,t)$ should be available, normalized in the same way as the distinct part.