Is your feature request related to a problem? Please describe.
At the moment, the HDF5 trajectory file stores the positions of all atoms at a given time step as a single chunk.
Describe the solution you'd like
For trajectories with larger number of atoms, each frame should be split up further into fixed-size chunks. This will speed up the analysis whenever the calculation is performed per atom and not per frame.
Describe alternatives you've considered
Any attempt at increasing the size of a chunk along the time axis to include multiple frames ended up slowing down the converters.
Is your feature request related to a problem? Please describe. At the moment, the HDF5 trajectory file stores the positions of all atoms at a given time step as a single chunk.
Describe the solution you'd like For trajectories with larger number of atoms, each frame should be split up further into fixed-size chunks. This will speed up the analysis whenever the calculation is performed per atom and not per frame.
Describe alternatives you've considered Any attempt at increasing the size of a chunk along the time axis to include multiple frames ended up slowing down the converters.
Additional context N/A