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ISUgenomics / SequelQC

PacBio quality check program specifically for Sequel platform
GNU General Public License v3.0
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too much memory comsumption? #4

Closed daaaaande closed 3 months ago

daaaaande commented 3 years ago

Hi, i was trying to run SequelQC on a hifireads.bam file: ./SequelQC.sh -u ../../../example_data/sample.hifi_reads.bam

Running in NO_SCRAPS mode ./SequelQC.sh: xrealloc: Konnte nicht 18446744073579733632 Bytes reservieren. is basically saying could not allocate enough RAM. acording to my calculator this would mean it needs a lot of RAM? how can i fix this? any help would be appreciated

Cheers

aseetharam commented 3 years ago

Hello @daaaaande: HiFi reads would be CCS reads and SequelTools will only work with subreads and/or scrap files, unfortunately. PS: SequelTools supersedes SequelQC and is available here: https://github.com/ISUgenomics/SequelTools

Thanks,