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ISUgenomics / SequelTools

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Passing only one bam file to the programm #15

Open asan-emirsaleh opened 3 years ago

asan-emirsaleh commented 3 years ago

Hello! I have FILENAME.bam.1 file downloaded from ncbi. How can I use it in SequelTools CLI? I am going to rename it (to left an '.1' suffix off) and to create a subreads.txt file with the only record pointing to that file. Then I will pass it to SequelTolls. Is it correct?

aseetharam commented 2 years ago

Yes, @asantat, that should work. When you download the file using tools like wget or curl, it automatically renames the files with the .1 extension, if there is already a file with that name, perhaps that's what caused this in the first place. Hope this helps!