Open SamQu25 opened 1 year ago
Hello,
I was trying to run Quality Control function on a 20GB "subreads.bam" file which resulted in the following:
Command:
bash SequelTools.sh -t Q -u /path/to/file/filename.subreads.bam -v
Error:
Beginning quality control function
Running in NO_SCRAPS mode SequelTools.sh: xmalloc: cannot allocate 18446744072964322772 bytes (44300517376 bytes allocated)
Running in NO_SCRAPS mode
SequelTools.sh: xmalloc: cannot allocate 18446744072964322772 bytes (44300517376 bytes allocated)
For some reason it tries to allocate 18 million TB of storage. Perhaps I did something wrong during setup or my command has an error.
I ran it on a Server Cluster which uses Linux.
Cheers
Samuel
Hello,
I was trying to run Quality Control function on a 20GB "subreads.bam" file which resulted in the following:
Command:
bash SequelTools.sh -t Q -u /path/to/file/filename.subreads.bam -vError:
Beginning quality control functionRunning in NO_SCRAPS modeSequelTools.sh: xmalloc: cannot allocate 18446744072964322772 bytes (44300517376 bytes allocated)For some reason it tries to allocate 18 million TB of storage. Perhaps I did something wrong during setup or my command has an error.
I ran it on a Server Cluster which uses Linux.
Cheers
Samuel