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ISUgenomics / SequelTools

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Change env python #8

Open KristinaGagalova opened 3 years ago

KristinaGagalova commented 3 years ago

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in 

/usr/bin/python

but it's from conda. You should change the header of the python files in order to have that working

#!/usr/bin/env python

Thank tou in advance!

DavidEHufnagel commented 3 years ago

That is an interesting suggestion. Thank you! I will discuss it with my colleagues.

Best, Dr. David E. Hufnagel

On Mon, Nov 9, 2020 at 7:50 PM Kristina Gagalova notifications@github.com wrote:

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in

/usr/bin/pythin

but it's from conda. You should change the header of the python files in order to have that working

!/usr/bin/env python

Thank tou in advance!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/ISUgenomics/SequelTools/issues/8, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABQPE3LHXUEY2AH4TPRTJ5DSPCL75ANCNFSM4TQCDKOA .

DavidEHufnagel commented 3 years ago

Thank you for your suggestion. It will be implemented soon!

Best, Dr. David E. Hufnagel

On Mon, Nov 9, 2020 at 7:50 PM Kristina Gagalova notifications@github.com wrote:

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in

/usr/bin/pythin

but it's from conda. You should change the header of the python files in order to have that working

!/usr/bin/env python

Thank tou in advance!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/ISUgenomics/SequelTools/issues/8, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABQPE3LHXUEY2AH4TPRTJ5DSPCL75ANCNFSM4TQCDKOA .

DavidEHufnagel commented 3 years ago

This change has now been implemented. Thanks again for the suggestion and best of luck with your research!

--Dr. David E. Hufnagel

On Tue, Nov 10, 2020 at 3:56 PM David Hufnagel davidehuf@gmail.com wrote:

Thank you for your suggestion. It will be implemented soon!

Best, Dr. David E. Hufnagel

On Mon, Nov 9, 2020 at 7:50 PM Kristina Gagalova notifications@github.com wrote:

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in

/usr/bin/pythin

but it's from conda. You should change the header of the python files in order to have that working

!/usr/bin/env python

Thank tou in advance!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/ISUgenomics/SequelTools/issues/8, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABQPE3LHXUEY2AH4TPRTJ5DSPCL75ANCNFSM4TQCDKOA .

KristinaGagalova commented 3 years ago

Thanks guys for the tool, I am using it for my project! All the best Kristina