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ITA-Solar / rh

RH 1.5D
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segmentation error with atmos file from RADYN #38

Closed pjorion closed 4 months ago

pjorion commented 4 months ago

I get an output model atmos file from fchroma solar model database. I run it through the idl procedures to write it into ncdf file compatible with RH1.5. The parameters in the atmos file look completely fine when I plot them. But RH1.5 throws segmentation errors which do not provide much information about the problem. Attached are the input files for RH1.5 (https://drive.google.com/drive/folders/16npc6d-LC44NSvQDu-WHeCNd6w85kR28?usp=share_link) The error I receive is : bnode034:2016153:0:2016153] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x10500000104) [bnode034:2016154:0:2016154] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x10500000104) ==== backtrace (tid:2016153) ==== 0 0x0000000000054db0 GI___sigaction() :0 1 0x00000000004098dc distribute_jobs() ???:0 2 0x0000000000404a60 main() ???:0 3 0x000000000003feb0 libc_start_call_main() ???:0 4 0x000000000003ff60 __libc_start_main_alias_2() :0 5 0x0000000000404be5 _start() ???:0

[bnode034:2016153] Process received signal [bnode034:2016153] Signal: Segmentation fault (11) [bnode034:2016153] Signal code: (-6) [bnode034:2016153] Failing at address: 0x1d65c001ec399 [bnode034:2016153] [ 0] /lib64/libc.so.6(+0x54db0)[0x7f339c654db0] [bnode034:2016153] [ 1] ./rh15d_ray_pool[0x4098dc] [bnode034:2016153] [ 2] ./rh15d_ray_pool[0x404a60] [bnode034:2016153] [ 3] /lib64/libc.so.6(+0x3feb0)[0x7f339c63feb0] ==== backtrace (tid:2016154) ==== 0 0x0000000000054db0 GI___sigaction() :0 1 0x00000000004098dc distribute_jobs() ???:0 [bnode034:2016153] 2 0x0000000000404a60 main() ???:0 3 0x000000000003feb0 libc_start_call_main() ???:0 4 0x000000000003ff60 __libc_start_main_alias_2() :0 5 0x0000000000404be5 _start() ???:0

[bnode034:2016154] Process received signal [bnode034:2016154] Signal: Segmentation fault (11) [bnode034:2016154] Signal code: (-6) [bnode034:2016154] Failing at address: 0x1d65c001ec39a [ 4] [bnode034:2016154] /lib64/libc.so.6(libc_start_main+0x80)[0x7f339c63ff60] [bnode034:2016153] [ 5] ./rh15d_ray_pool[0x404be5] [bnode034:2016153] End of error message [ 0] /lib64/libc.so.6(+0x54db0)[0x7fbe0e854db0] [bnode034:2016154] [ 1] ./rh15d_ray_pool[0x4098dc] [bnode034:2016154] [ 2] ./rh15d_ray_pool[0x404a60] [bnode034:2016154] [ 3] /lib64/libc.so.6(+0x3feb0)[0x7fbe0e83feb0] [bnode034:2016154] [ 4] /lib64/libc.so.6(libc_start_main+0x80)[0x7fbe0e83ff60] [bnode034:2016154] [ 5] ./rh15d_ray_pool[0x404be5] [bnode034:2016154] End of error message

Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted.

mpirun noticed that process rank 1 with PID 2016154 on node bnode034 exited on signal 11 (Segmentation fault).

tiagopereira commented 4 months ago

Hi, please don't write in large (header) font, it makes it hard to read. RH1.5D is provided "as is", as I don't have time to provide user support. There are few details provided, which makes it hard to identify a bug in RH. I am closing this for now, but if you have more specific details on why this could be a bug in RH, feel free to reopen.