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ITBE-Lab / MA

The Modular Aligner and The Modular SV Caller
MIT License
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Preset for PacBio CCS? #2

Open armintoepfer opened 5 years ago

armintoepfer commented 5 years ago

Hi!

Do you have parameter recommendations for long accurate reads such as HiFi PacBio reads of ~15kb >Q20?

Thank you, Armin

MarkusRainerSchmidt commented 5 years ago

Hello,

Currently, we do not have a special setting for HiFi PacBio. Please use the PacBio presetting as fallback until we have fixed this issue. However, special settings for HiFi PacBio are only expected to deliver improved runtimes. We do not expect improvements with respect to accuracy. We will look into this matter shortly.

Best wishes, Arne and Markus