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IUBLibTech / newton_chymistry

New version of 'The Chymistry of Isaac Newton', using XProc pipelines to generate a website based on TEI XML encodings of Newton's alchemical manuscripts, and Apache Solr as a search engine.
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Downloading P5 files from Xubmit in admin page is not successful in the local environment #116

Closed tubesoft closed 2 years ago

tubesoft commented 2 years ago

I tried to update my local P5 files from Xubmit on the admin page (http://localhost:8080/admin), but I encountered some errors.

When I tried to update the authoritative bibliography, I got this message:

com.xmlcalabash.core.XProcException: Could not load http://algernon.dlib.indiana.edu:8080/xubmit/rest/repository/newtonbib/CHYM000001.xml (file:/[MY LOCATION]/newton_chymistry/xproc/administration.xpl) dtd-validate=false
    at com.xmlcalabash.core.XProcException.stepError(XProcException.java:184)
    at com.xmlcalabash.library.Load.run(Load.java:82)
    at com.xmlcalabash.runtime.XAtomicStep.run(XAtomicStep.java:389)
    at com.xmlcalabash.runtime.XPipeline.doRun(XPipeline.java:236)
    at com.xmlcalabash.runtime.XPipeline.run(XPipeline.java:136)
    at com.xmlcalabash.runtime.XPipelineCall.run(XPipelineCall.java:94)
    at com.xmlcalabash.runtime.XCompoundStep.run(XCompoundStep.java:262)
    at com.xmlcalabash.runtime.XChoose.run(XChoose.java:135)
    at com.xmlcalabash.runtime.XPipeline.doRun(XPipeline.java:236)
    at com.xmlcalabash.runtime.XPipeline.run(XPipeline.java:136)
    at com.conaltuohy.xprocz.XProcZServlet$RunnablePipeline.run(XProcZServlet.java:160)
    at com.conaltuohy.xprocz.XProcZServlet.service(XProcZServlet.java:524)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
    at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:668)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
    at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:690)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
    at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:615)
    at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
    at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:818)
    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1627)
    at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    at java.lang.Thread.run(Thread.java:748)

Also, when I attempted to download the manuscript files, I got this message:

Error err:FOJS0001net.sf.saxon.s9api.SaxonApiException: Invalid JSON input: Unexpected character '<' (\u3c) at position 0
    at net.sf.saxon.s9api.XsltTransformer.transform(XsltTransformer.java:606)
    at com.xmlcalabash.library.XSLT.run(XSLT.java:254)
    at com.xmlcalabash.runtime.XAtomicStep.run(XAtomicStep.java:389)
    at com.xmlcalabash.runtime.XPipeline.doRun(XPipeline.java:236)
    at com.xmlcalabash.runtime.XPipeline.run(XPipeline.java:136)
    at com.xmlcalabash.runtime.XPipelineCall.run(XPipelineCall.java:94)
    at com.xmlcalabash.runtime.XCompoundStep.run(XCompoundStep.java:262)
    at com.xmlcalabash.runtime.XChoose.run(XChoose.java:135)
    at com.xmlcalabash.runtime.XPipeline.doRun(XPipeline.java:236)
    at com.xmlcalabash.runtime.XPipeline.run(XPipeline.java:136)
    at com.conaltuohy.xprocz.XProcZServlet$RunnablePipeline.run(XProcZServlet.java:160)
    at com.conaltuohy.xprocz.XProcZServlet.service(XProcZServlet.java:524)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
    at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:668)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
    at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:690)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
    at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:615)
    at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
    at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:818)
    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1627)
    at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    at java.lang.Thread.run(Thread.java:748)
Caused by: net.sf.saxon.trans.XPathException: Invalid JSON input: Unexpected character '<' (\u3c) at position 0
    at net.sf.saxon.ma.json.JsonParser.error(JsonParser.java:401)
    at net.sf.saxon.ma.json.JsonParser.invalidJSON(JsonParser.java:414)
    at net.sf.saxon.ma.json.JsonParser.access$000(JsonParser.java:26)
    at net.sf.saxon.ma.json.JsonParser$JsonTokenizer.readToken(JsonParser.java:563)
    at net.sf.saxon.ma.json.JsonParser$JsonTokenizer.next(JsonParser.java:453)
    at net.sf.saxon.ma.json.JsonParser.parse(JsonParser.java:68)
    at net.sf.saxon.ma.json.ParseJsonFn.parse(ParseJsonFn.java:89)
    at net.sf.saxon.ma.json.JsonDoc.call(JsonDoc.java:86)
    at net.sf.saxon.expr.FunctionCall.iterate(FunctionCall.java:547)
    at net.sf.saxon.expr.instruct.GlobalVariable.getSelectValue(GlobalVariable.java:643)
    at net.sf.saxon.expr.instruct.GlobalVariable.actuallyEvaluate(GlobalVariable.java:724)
    at net.sf.saxon.expr.instruct.GlobalVariable.evaluateVariable(GlobalVariable.java:692)
    at net.sf.saxon.expr.GlobalVariableReference.evaluateVariable(GlobalVariableReference.java:126)
    at net.sf.saxon.expr.VariableReference.iterate(VariableReference.java:536)
    at net.sf.saxon.expr.ItemChecker.iterate(ItemChecker.java:227)
    at net.sf.saxon.expr.ForExpression.iterate(ForExpression.java:399)
    at net.sf.saxon.expr.ItemChecker.iterate(ItemChecker.java:227)
    at net.sf.saxon.expr.ForExpression.iterate(ForExpression.java:399)
    at net.sf.saxon.expr.FilterExpression.iterate(FilterExpression.java:1139)
    at net.sf.saxon.expr.instruct.ForEach.processLeavingTail(ForEach.java:434)
    at net.sf.saxon.expr.instruct.Instruction.process(Instruction.java:151)
    at net.sf.saxon.expr.instruct.ElementCreator.processLeavingTail(ElementCreator.java:337)
    at net.sf.saxon.expr.instruct.ElementCreator.processLeavingTail(ElementCreator.java:284)
    at net.sf.saxon.expr.LetExpression.processLeavingTail(LetExpression.java:709)
    at net.sf.saxon.expr.instruct.TemplateRule.applyLeavingTail(TemplateRule.java:347)
    at net.sf.saxon.trans.Mode.applyTemplates(Mode.java:505)
    at net.sf.saxon.Controller.transformDocument(Controller.java:2411)
    at net.sf.saxon.Controller.transform(Controller.java:1979)
    at net.sf.saxon.s9api.XsltTransformer.transform(XsltTransformer.java:596)
    ... 34 more

Judging from the messages, it does not seem to be due to my local side issues. If anyone knows what is happening here, please let me know.

mdalmau commented 2 years ago

Replace “Algernon.dlib” with “textproc.dlib.indiana.edu”

Algernon has been retired. Any references to the “Algernon” server should point to “testproc.”

Typos and Autocorrections Courtesy of my iPhone and my Spanglish Upbringing

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randalldfloyd commented 2 years ago

@mdalmau @tubesoft These server locations were changed accordingly in the server instances but I forgot to push them upstream for locally cloned repos to pick up. Do a pull on master and it should fix it.