Refactored version of the IU School of Medicine neuroscience connectivity pipeline that executes pre-processing of anatomical, functional, and diffusion Magnetic Resonance Imaging data (written in Python and Bash).
The T1_brain_betQC is output from bet along with a brain mask. The mask is used for comparison to ants mask, but is the brain image used for anything? If not, maybe its best to remove it after its created to reduce on space and file count.
The T1_brain_betQC is output from bet along with a brain mask. The mask is used for comparison to ants mask, but is the brain image used for anything? If not, maybe its best to remove it after its created to reduce on space and file count.