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IUSCA / IUSM-ConnPipe

Refactored version of the IU School of Medicine neuroscience connectivity pipeline that executes pre-processing of anatomical, functional, and diffusion Magnetic Resonance Imaging data (written in Python and Bash).
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Comment: Brain stem in brain mask #115

Open echumin opened 2 years ago

echumin commented 2 years ago

Compared to the legacy matlab version, this version includes the brainstem in the T1_GM_mask. Right now I am not sure if this will have an impact down the stream, for example in the fMRI section for global GM signal.

echumin commented 9 months ago

Leaving this for now to revisit after new version release.