Refactored version of the IU School of Medicine neuroscience connectivity pipeline that executes pre-processing of anatomical, functional, and diffusion Magnetic Resonance Imaging data (written in Python and Bash).
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User provided subcortical parcellation boundary problem #116
Under T1b the flag:
export configs_T1_subcortUser=true
lets the user provide a subcortical parcellation of their choosing.
The is an issue where the boundaries of subcortical nodes are not aligned with subcortical GM
I will add a separate issue for subcortical encroaching into the insula
Under T1b the flag:
export configs_T1_subcortUser=truelets the user provide a subcortical parcellation of their choosing. The is an issue where the boundaries of subcortical nodes are not aligned with subcortical GMI will add a separate issue for subcortical encroaching into the insula