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IUSCA / IUSM-ConnPipe

Refactored version of the IU School of Medicine neuroscience connectivity pipeline that executes pre-processing of anatomical, functional, and diffusion Magnetic Resonance Imaging data (written in Python and Bash).
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feature request: change or add a function version of main.sh #120

Closed echumin closed 7 months ago

echumin commented 2 years ago

In my running of the pipeline, its tedious for every run, I need to create a subj2run text file, set it in the config and set the config in main. I have multiple runs of subject or subjects I run at the same time, so I am creating multiple main and config files.

If main.sh were a function that took as input a config file and maybe even the subj2run text file, then I would be able to keep as set of config files that I can use when I call the main.sh function, without having to edit main.

echumin commented 7 months ago

it will be a function in the new version.