Dicom file checks do not follow directory links

IUSCA / IUSM-ConnPipe

Refactored version of the IU School of Medicine neuroscience connectivity pipeline that executes pre-processing of anatomical, functional, and diffusion Magnetic Resonance Imaging data (written in Python and Bash).

Other

3 stars 2 forks source link

Dicom file checks do not follow directory links #127

Closed echumin closed 7 months ago

echumin commented 2 years ago

I tried running the pipeline using symbolic links to dicom directories rather than copying the files and was getting a no dicom files found error. I ended up copying the dicom directory over and then it ran fine, which makes me think that whatever file checks are in place dont follow links to their destination.

echumin commented 7 months ago

not relevant for bids dataset compliant version.