Refactored version of the IU School of Medicine neuroscience connectivity pipeline that executes pre-processing of anatomical, functional, and diffusion Magnetic Resonance Imaging data (written in Python and Bash).
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path_DWI_EDDY variable needs rename to EDDYpath in line 89 and 90 of DWI_A_eddy.sh #161
https://github.com/IUSCA/IUSM-ConnPipe/blob/f2e126f8813f4a7dd4f8dd5ba44c4d709b689934/src/scripts/DWI_A_eddy.sh#L89