rpetrovski
commented
2 years ago Xenia, can you please confirm that you did 'make clean ' before 'make CFLAGS:='
R.
On Wed, 9 Feb 2022, 04:23 sukhanovaxenia, @.***> wrote:
To whom it may concer.
Recently tried to build hash table for human genome fasta of 14th chromosome, version hg38.
However after multiple tries and reinstallations each attempt continued ending up with the rror 'Segmentaton fault'.
I've also followed previous solution tips, mentioned in other issues (for instance, re-installation with make CFLAGS:=). Unfotunately, it didn't help.
Here is the code I launch from DRAGMAP dir:
dragen-os --build-hash-table true --ht-reference ~/hg38.chr14.fna --output-directory ~/ref
And the error I get: `2022-02-09 04:12:51 [7feb2d8b7c00] Version: 1.2.1-7-gc87d93aa 2022-02-09 04:12:51 [7feb2d8b7c00] argc: 7 argv: dragen-os --build-hash-table true --ht-reference /home/yc-user/hg38.chr14.fna --output-directory /home/yc-user/ref Building hash table from /home/yc-user/hg38.chr14.fna
Segmentation fault`
Look forward to hearing from you. Hope to recieve any suggestions and resolutions.
Your faithfully,
Sukhanova Xenia
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sukhanovaxenia
To whom it may concer.
Recently tried to build hash table for human genome fasta of 14th chromosome, version hg38.
However after multiple tries and reinstallations each attempt continued ending up with the rror 'Segmentaton fault'.
I've also followed previous solution tips, mentioned in other issues (for instance, re-installation with make CFLAGS:=). Unfotunately, it didn't help.
Here is the code I launch from DRAGMAP dir:
dragen-os --build-hash-table true --ht-reference ~/hg38.chr14.fna --output-directory ~/refAnd the error I get:
`2022-02-09 04:12:51 [7feb2d8b7c00] Version: 1.2.1-7-gc87d93aa 2022-02-09 04:12:51 [7feb2d8b7c00] argc: 7 argv: dragen-os --build-hash-table true --ht-reference /home/yc-user/hg38.chr14.fna --output-directory /home/yc-user/ref
Building hash table from /home/yc-user/hg38.chr14.fna
Segmentation fault`
Look forward to hearing from you. Hope to recieve any suggestions and resolutions.
Your faithfully,
Sukhanova Xenia