search

Illumina / ExpansionHunter

A tool for estimating repeat sizes
Other
177 stars 51 forks source link

Looking for a variant catalog for C. elegans #100

Open moldach opened 4 years ago

moldach commented 4 years ago

I would like to use ExpansionHunter on C. elegans WGS data and I'm wondering if you are aware of a Variant Catalog (in JSON format for this model organism?

I know, the Caenorhabditis elegans Natural Diversity Resource CeDNR has variant data in .VCF format. Is there a helper script for converting this information into a custom variant catalogue?

egor-dolzhenko commented 4 years ago

Unfortunately, I am not aware of a variant catalog for C. elegans. However, we could help you create one. If you are interested, perhaps we could connect by email?

Best wishes, Egor

moldach commented 4 years ago

Hi Egor,

I would appreciate that. You can contact me at moldach@ucalgary.ca

Best, Matthew

nainai77 commented 1 year ago

Unfortunately, I am not aware of a variant catalog for C. elegans. However, we could help you create one. If you are interested, perhaps we could connect by email?

Best wishes, Egor

Hi Egor,

I also need a variant catalog for Oryza satival, could you help me create one or tell me how to create it?

Best, Ayn