Closed nataliaAlfarito closed 1 year ago
I have been trying to run Expansion Hunter (v5.0.0) on human samples with my own variant catalog in my lab's cluster, but get the following error:
/opt/sge/default/spool/node04/job_scripts/505084: line 40: 31368 Illegal instruction (core dumped) ExpansionHunter --analysis-mode streaming --sex male --reads sample_1_clean.rmdup.addgp.bam --reference genome.fa --variant-catalog variant_catalog_EnClAll.json --output-prefix sample_1_clean
This error also produces a file named "core.31368", but it is a binary file so I can't get many information out of it.
I am confused because the first job I ran using this software worked fine, but now that I want to use it again I get this error.
I have been trying to run Expansion Hunter (v5.0.0) on human samples with my own variant catalog in my lab's cluster, but get the following error:
/opt/sge/default/spool/node04/job_scripts/505084: line 40: 31368 Illegal instruction (core dumped) ExpansionHunter --analysis-mode streaming --sex male --reads sample_1_clean.rmdup.addgp.bam --reference genome.fa --variant-catalog variant_catalog_EnClAll.json --output-prefix sample_1_clean
This error also produces a file named "core.31368", but it is a binary file so I can't get many information out of it.
I am confused because the first job I ran using this software worked fine, but now that I want to use it again I get this error.