SVTYPE missing from variant lines

[bartcharbon]

We're using expansion hunter 5.0.0 to call STRs.

Based on the docs I would expect variant lines in the VCf to have a INFO field "SVTYPE=STR". The INFO/SVTYPE field vcfheader is present, but the field is missing from the actual data lines.

[andreasssh]

If this is important for you, then I just fixed this issue in my fork of EH 5.0.0, accessible @ https://gitlab.com/andreassh/ExpansionHunter/