Illumina ExpansionHunterDenovo issues

Illumina / ExpansionHunterDenovo

A suite of tools for detecting expansions of short tandem repeats

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What is the reason for the majority of p-values being 1.0?

#65 jingydz opened 1 month ago
0
Allelic frequency of identified STRs

#64 gspirito opened 4 months ago
0
Documentation: "--test-method" should be "--test-params"

#63 wwgordon opened 7 months ago
0
Generate STR profiles for each sample

#62 wjzzq opened 10 months ago
0
Number of samples in outlier analysis

#61 gevro opened 11 months ago
1
Interpreting EHDN locus-based analysis results

#60 gspirito opened 1 year ago
0
--min-inrepeat-read-pairs argument not working?

#59 ztang99 closed 1 year ago
0
Bump scipy from 1.3.1 to 1.10.0 in /scripts

#58 dependabot[bot] opened 1 year ago
0
Difference in normalised counts for the same sample in str-pofiles/....motif.tsv and

#57 taigalokhid opened 1 year ago
0
Building on M1 Mac from source

#56 jonathan-bravo opened 1 year ago
0
difference of tandem repeats counts between PCR-based data and PCR-free data

#55 doedoe0607 opened 1 year ago
0
Read block operation failed with error

#54 pedoman-GitHub opened 1 year ago
0
Bump numpy from 1.17.1 to 1.22.0 in /scripts

#53 dependabot[bot] opened 2 years ago
0
Bonferroni Correction

#52 jonathan-bravo opened 2 years ago
2
merge profile

#51 MarineBergot opened 2 years ago
0
Restricting str-profile generation to contigs/regions provided in .bed or similar

#50 am8265 opened 2 years ago
1
Interpreting EHDN motif-based analysis results

#49 gspirito opened 2 years ago
4
Difficulty understanding the output from EHDN

#48 sagnikbanerjee15 opened 2 years ago
4
EHDN truncated output

#47 jonnyelse opened 2 years ago
3
Some Question about EHdn..

#46 a7420174 opened 2 years ago
13
Inaccurate copy number

#45 oleraj opened 3 years ago
1
Boost install URL broken

#44 markziemann closed 3 years ago
2
Versions of the json profiles

#43 karynne7 opened 3 years ago
1
More questions about EHdn

#42 swlx08 closed 3 years ago
9
manifest for outlier

#41 hchetia closed 3 years ago
9
Motif size

#40 hchetia closed 3 years ago
4
get sequence on reference genome of STR

#39 CocoMlle opened 3 years ago
3
Could you please tell me how to filter the result with the zscore?

#38 swlx08 closed 3 years ago
3
post-processing step

#37 CocoMlle opened 3 years ago
2
MacOSX install error when downloading boost_1_67_0.tar.bz2

#36 bw2 opened 3 years ago
2
Merging requires much memory. Is there a way to split the json output ?

#35 lindenb opened 3 years ago
5
Motif length variation

#34 kumara3 opened 4 years ago
2
Bioconda

#33 christopher-schroeder opened 4 years ago
4
outlier script requires at least one case, but

#32 trickytank opened 4 years ago
1
Non PCR-free WGS

#31 wengkhong closed 4 years ago
3
counts column format

#30 xmpthz closed 4 years ago
2
Error message when running annotate_ehdn.sh

#29 melnel000 closed 4 years ago
5
Skip unaligned regions

#28 egor-dolzhenko closed 4 years ago
0
merge error information "invalid contig name MT"

#27 mingmoo opened 4 years ago
6
Add bamlet script

#26 egor-dolzhenko closed 4 years ago
0
Describe case/control and outlier analysis

#25 egor-dolzhenko closed 4 years ago
0
Implement targeted analysis

#24 egor-dolzhenko closed 4 years ago
0
Update docs and examples

#23 egor-dolzhenko closed 4 years ago
0
Updated documentation regarding prioritization strategies for locus outlier analysis

#22 Phillip-a-richmond closed 4 years ago
0
Update annotation documentation

#21 mfbennett closed 4 years ago
0
Add annotation script

#20 mfbennett closed 4 years ago
0
Add an introductory documentation section

#19 egor-dolzhenko closed 4 years ago
0
Added Documentation regarding outlier analysis

#18 Phillip-a-richmond closed 4 years ago
0
Document read log

#17 egor-dolzhenko closed 4 years ago
0
Normalize output of the profile command

#16 egor-dolzhenko closed 4 years ago
0