Added statement for handling indels for haploid calls

Illumina / GTCtoVCF

Script to convert GTC/BPM files to VCF

Apache License 2.0

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Closed brianhill11 closed 5 years ago

brianhill11 commented 6 years ago

The reasoning for this code change was explained in Issue #21 and is meant to handle cases where haploid indel calls are printed as diploid.

jjzieve commented 5 years ago

See discussion in https://github.com/Illumina/GTCtoVCF/issues/21 this is best left to downstream analysis.