Illumina / GTCtoVCF

Script to convert GTC/BPM files to VCF
Apache License 2.0
41 stars 31 forks source link

Uses GNU and OSX compatible mktemp #39

Closed jjzieve closed 4 years ago

jjzieve commented 5 years ago

I realized we're assuming GTCtoVCF will be run on Linux systems, especially for production usage. For example, when the README points to the Linux Miniconda install script. But it seems to work fine on Darwin with a couple tweaks to the download_reference.sh script. And users may want to run locally on a Mac if they're just testing it out.

jjzieve commented 5 years ago

Also forgot I had to run brew install coreutils as well