GQ type is "String" instead of "Float"

Illumina / GTCtoVCF

Script to convert GTC/BPM files to VCF

Apache License 2.0

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Closed kmhernan closed 4 years ago

kmhernan commented 4 years ago

I see that in this line https://github.com/Illumina/GTCtoVCF/blob/1a9709baa7116eea56e09dd185bd4358a165f34d/GencallFormat.py#L33 the GQ type is set to String but isn't it a Float? This has caused segfaults in some other downstream tools. When I change String to Float it's fine.

jjzieve commented 4 years ago

This was changed to an Integer in PR #53