Feature/change gq type - Githubissues

Illumina / GTCtoVCF

Script to convert GTC/BPM files to VCF

Apache License 2.0

41 stars 31 forks source link

Closed jjzieve closed 4 years ago

jjzieve commented 4 years ago

Updates GQ Format to a phred-scaled quality score (Integer) VCF specs (i.e. https://samtools.github.io/hts-specs/VCFv4.1.pdf page 6) and updates tests VCFs to reflect changes.

jjzieve commented 4 years ago

@brianyiktaktsui confirmed compatibility with bcftools