Closed smparsons96 closed 6 years ago
Hi @smparsons96 , If the user knows for sure that "GSA-24v1-0_A6.csv" is the file used to generate "GSA-24v1-0_A6-hg37.bpm", then renaming "GSA-24v1-0_A6.csv" to "GSA-24v1-0_A6-hg37.csv" should solve the problem.
Thanks, that was my suspicion as well.
On Fri, Feb 9, 2018 at 4:04 PM, YongFugaLi notifications@github.com wrote:
Hi @smparsons96 https://github.com/smparsons96 , If the user knows for sure that "GSA-24v1-0_A6.csv" is the file used to generate "GSA-24v1-0_A6-hg37.bpm", then renaming "GSA-24v1-0_A6.csv" to "GSA-24v1-0_A6-hg37.csv" should solve the problem.
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A user is attempting to run the conversion using the CSV version of the manifest file in order to generate indel records in the vcf. It results in an error (see attached) suggesting the same version must be used as was used during generation of gtc calls.