search

Illumina / GTCtoVCF

Script to convert GTC/BPM files to VCF
Apache License 2.0
41 stars 31 forks source link

SB calculation #77

Open marissa97 opened 1 year ago

marissa97 commented 1 year ago

Hallo,

I am analysing vcf files that are produced from miseq. There is strand bias filter used, but i dont know how this SB is calculated. I need to understand this to be able to find the right threshold. Can you please tell me, how the SB is calculated in miseq pipeline? Thankyou!

jzieve commented 1 year ago

Hi, I'm not sure this is the correct library for you. This library is designed for converting to GTCs which are the product of an iScan (Microarray) pipeline. I don't know a lot about the SB or how its calculated w.r.t VCFs generated from a MiSeq. I would reach out to support@illumina.com with your question.