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Illumina / Nirvana

The nimble & robust variant annotator
https://illumina.github.io/NirvanaDocumentation/
GNU General Public License v3.0
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Singularity & Nirvana #106

Open yr542 opened 1 year ago

yr542 commented 1 year ago

I was wondering if I could know what Singularity path to use with Nirvana?

I know that in order to pull the package I need to do the following:

singularity pull docker://annotation/nirvana:3.14

but what path would I use in a singularity exec command to run Nirvana. Given what I see from looking into the singularity file the path will be /opt/nirvana/:

singularity exec nirvana_3.14.sif /bin/bash -c "cd /opt/nirvana/ && ls"

however, I would like to confirm this?