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Illumina / Nirvana

The nimble & robust variant annotator
https://illumina.github.io/NirvanaDocumentation/
GNU General Public License v3.0
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Core dump in Nirvana.dll #111

Open wuttke opened 11 months ago

wuttke commented 11 months ago 
root@636d2316ff6e:/# dotnet /Nirvana/Nirvana-v3.18.1/Nirvana.dll \
     -c $CACHE_DIR --sd $SA_DIR -r $REF_TEST -i /Nirvana/test.vcf.gz -o /Nirvana/myout
---------------------------------------------------------------------------
Nirvana                                             (c) 2022 Illumina, Inc.
Stromberg, Roy, Platzer, Siddiqui, Ouyang, et al         3.18.1-0-g05f88047
---------------------------------------------------------------------------

Initialization                                         Time     Positions/s
---------------------------------------------------------------------------
Illegal instruction (core dumped)

Using this environment:

docker run --rm -it -v /data/programs/bin/ngs/Nirvana:/Nirvana mcr.microsoft.com/dotnet/sdk:6.0 bash

Any idea?

wuttke commented 11 months ago

Same commandline works using Windows.

TapestriSoftware commented 9 months ago

Having the same problem on Ubuntu (current stable release) in just native environment (non-docker). Tried recompiling the Block compression library as mentioned in another post I found by Google. This is running as a VM under Workstation 17, but interestingly I got it to work fine on a CentOS7 distro on the same platform, I have tried several different attempts at installing....I can get the help to run though....