search

Illumina / Nirvana

The nimble & robust variant annotator
https://illumina.github.io/NirvanaDocumentation/
GNU General Public License v3.0
170 stars 44 forks source link

Got Error when using nirvana to do annotate #40

Closed LvLH closed 3 years ago

LvLH commented 3 years ago

command

dotnet.exe ../bin/Release/netcoreapp2.1/Nirvana.dll -c ../Data/Cache/GRCh37/Both -r ../Data/References/Homo_sapiens.GRCh37.Nirvana.dat -i sample1.vcf -o sample1.annotated I got Error below:

---------------------------------------------------------------------------
Nirvana                                             (c) 2020 Illumina, Inc.
Stromberg, Roy, Lajugie, Jiang, Li, and Kang                         3.10.1
---------------------------------------------------------------------------

Initialization                                         Time     Positions/s
---------------------------------------------------------------------------
Cache                                               00:00:01.5

Reference                                Preload    Annotation   Variants/s
---------------------------------------------------------------------------

ERROR: Expected 7443623 bytes from the block, but received only 2449027 bytes.

Hope get your help. Thanks.

LvLH commented 3 years ago

I solved this problem, for my downloading files with some truncated. Such as " Both.sift.ndb". Sorry to trouble.

MichaelStromberg commented 3 years ago

Glad to hear that you found the root cause! In the Downloader, we try to provide additional information about which files may have been truncated in case you get a partial download. The good news is that the Downloader can fix those issues and only download the files that have issues or that are out-of-date.