Docker images for Nirvana 3.14+

[LeeTL1220]

The latest version of Nirvana docker image is 3.9.1, which has diverged from the documentation.

Are you planning to release later versions of Nirvana in a docker image? On dockerhub?

Feel free to close this issue once responding.

[MichaelStromberg]

Hi Lee,

In the past we haven't made regular releases on DockerHub, just on an ad hoc basis. I'll go ahead and create one for Nirvana 3.14 later today.

[LeeTL1220]

@MichaelStromberg Thanks for doing that!

I do not see a 3.14 tag available. I just want to confirm that I am not missing anything...

(https://hub.docker.com/r/annotation/nirvana/tags?page=1&ordering=last_updated)

[MichaelStromberg]

Hi Lee,

Sorry about that. Here you go: docker pull annotation/nirvana:3.14

In case you ever want to roll your own Nirvana Docker container, here's my Dockerfile: https://github.com/MichaelStromberg-Illumina/DotNetMisc/blob/master/Dockerfiles/Nirvana/Dockerfile

[LeeTL1220]

Thank you so much!

[LeeTL1220]

@MichaelStromberg Minor issues I noticed:

1) The v3.14 docker image generates discordant version number:

    "annotator": "Nirvana 3.13.0",

2) The v3.9.1 VEP datasource is newer than the v3.14 VEP datasource. See release date: 3.9.1:

    "dataVersion": "91.26.57",
.......
{
        "name": "VEP",
        "version": "91",
        "description": "BothRefSeqAndEnsembl",
        "releaseDate": "2018-03-05"
      }
...

v3.14

    "dataVersion": "91.27.61",
....
      {
        "name": "VEP",
        "version": "91",
        "description": "BothRefSeqAndEnsembl",
        "releaseDate": "2017-12-18"
      },
...

[natbutter]

Hi Lee,

Sorry about that. Here you go: docker pull annotation/nirvana:3.14

In case you ever want to roll your own Nirvana Docker container, here's my Dockerfile: https://github.com/MichaelStromberg-Illumina/DotNetMisc/blob/master/Dockerfiles/Nirvana/Dockerfile

Any chance that Dockerfile is still available somewhere? Looks like this may have been a private repo? Cheers.