Closed AdamuUu closed 2 years ago
Hi Adam, that's an interesting one. The MitoHeteroplasmy data source is embedded in Nirvana and we can't come up with a reason why this would suddenly fail. We see that the MitoHeteroplasmyReader has been unchanged since October 2020 and has been used on hundreds of thousands of VCFs.
Having said that, I see that you're running Nirvana 3.13. Did you compile it on your own or did you use the pre-compiled binaries that we posted in GitHub?
In the meantime, I'll try analyzing some COVID-19 VCFs using both Nirvana 3.13 and 3.14 to see if I can reproduce the error.
Hi Adam,
Since I didn't have the VCF that you used, I went ahead and used the COVID-19 VCF provided on our documentation site
I used the precompiled binaries for both 3.13 and 3.14 and everything worked well. You can find the precompiled binaries for Nirvana 3.14 here: https://github.com/Illumina/Nirvana/releases/tag/v3.14.0 (look in the assets section)
Hi Michael,
Thank you so much for help and support!
Best Regards, Adam
czw., 29 kwi 2021 o 23:13 Michael Strömberg @.***> napisał(a):
Hi Adam,
Since I didn't have the VCF that you used, I went ahead and used the COVID-19 VCF https://illumina.github.io/NirvanaDocumentation/files/Covid19Mutations.vcf.gz provided on our documentation site https://illumina.github.io/NirvanaDocumentation/introduction/covid19/
I used the precompiled binaries for both 3.13 and 3.14 and everything worked well. You can find the precompiled binaries for Nirvana 3.14 here: https://github.com/Illumina/Nirvana/releases/tag/v3.14.0 (look in the assets section)
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Could you help me with this one? What I run:
What I get: