Closed matteofloris closed 2 years ago
same problem with polyPhenScore and siftScore
I had the same problem
I suspect this has to do with the culture settings of dotnet. Can you please let me know how decimals are printed in your language/culture?
With "," I had to build a specific parser for these fields, but it does not happen in other fields with decimals
That explains the behavior. In Nirvana, some decimals are pre-populated while others are printed on the fly. I believe you will see this behavior with all decimals that we print on the fly.
I have created a bug ticket in our backlog to track this. https://nirvana-annotator.atlassian.net/browse/NIR-975
Great! Thanks
Issue has been fixed in the 3.18.0 release.
Hi, I just annotated my vcf with Nirvana 3.18. I got this error for the first variant:
json.decoder.JSONDecodeError: Expecting property name enclosed in double quotes
The problem is the phylopScore, which is formatted incorrectly by Nirvana. For example it reads:
"phylopScore":1,4
instead of
phylopScore":1.4