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Illumina / Nirvana

The nimble & robust variant annotator
https://illumina.github.io/NirvanaDocumentation/
GNU General Public License v3.0
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Error creating custom gene file format #66

Closed anleopa closed 2 years ago

anleopa commented 2 years ago

I am trying to create a custom annotation for genes by following the instruction described in https://illumina.github.io/NirvanaDocumentation/file-formats/custom-annotations/

Nevertheless, when I try to convert the example file (MyDatSource5.tsv) to Nirvana format using the command

dotnet bin/Release/netcoreapp3.1/SAUtils.dll customvar -r Data/References/Homo_sapiens.GRCh38.Nirvana.dat -i MyDataSource5.tsv -o CA

I have the following error: Unexpected header tag observed

No details about the error are provided.

rajatshuvro commented 2 years ago

for gene CA building please use the CustomGene command and not CustomVar.