Closed anleopa closed 2 years ago
I have annotated a VCF that has two consecutive polymorphisms: chr2 228194480 A T chr2 228194481 G T
I have noticed that in the final result a new variant has been added with this info: chr2 228194480 AG TT
¿Why is Nirvarna doing this?
By default, Nirvana recomposes variants. You can turn this off by using the command line parameter --disable-recomposition
I have annotated a VCF that has two consecutive polymorphisms: chr2 228194480 A T chr2 228194481 G T
I have noticed that in the final result a new variant has been added with this info: chr2 228194480 AG TT
¿Why is Nirvarna doing this?