Open olingerc opened 2 years ago
Hi @olingerc , currently, if a gene only has upstream or downstream variants, it is not represented in the genes section. So far none of our users have asked for them. But if you have a use case, please let us know and we will consider it.
Regards Rajat
Thanks @rajatshuvro . That makes a lot of sense. I can accept this behavior. Maybe a small notice in the documentation could help here?
I regularly have transcripts with a "hgnc" value but I can not find the corresponding gene in the genes section at the end of the json file. Could you give a few details about the criteria used to include a gene?
This is a sentence from the Nirvana main website:
For each gene that was referenced in the transcripts found in the positions section, there will be additional gene-level annotation in the gene section.