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Illumina / Nirvana

The nimble & robust variant annotator
https://illumina.github.io/NirvanaDocumentation/
GNU General Public License v3.0
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Looking for the within-callset AC, AN, AF for multi-sample VCF #86

Closed bw2 closed 1 year ago

bw2 commented 1 year ago

Hi, thank you for developing Nirvana. I have a joint-called VCF with 1000+ samples and would like to know the AC, AF, AN, and HC of each variant based on the samples contained in the VCF. I'm wondering if there's a way to get this info from Nirvana output without having to compute it using the "genotypes" list.

rajatshuvro commented 1 year ago

Hello @bw2 , Thank you for using Nirvana. Unfortunately, Nirvana has no functionality to compute any of the fields you mentioned.

Best Rajat