Which corresponds to the following variant in the original file:
chr1 309 . C T 0 FDRtranche2.00to10.00+ AC=1;AF=0.50;AN=2;DP=118;Dels=0.00;HRun=0;HaplotypeScore=153.70;MQ=21.12;MQ0=35;OQ=53.98;QD=0.46;SB=-50.01 GT:AD:DP:GL:GQ 0/1:103,9:32:-18.33,-9.64,-96.32:86.82
Python throws an error because of the following field: "variantFrequencies":[0,0804]
I assume that the correct value should be 0.0804 with a . rather than a , .
I annotated the "getting started" with the following command:
When I tried to parse the variants to json in Python, I found the following variant:
Which corresponds to the following variant in the original file:
Python throws an error because of the following field:
"variantFrequencies":[0,0804]
I assume that the correct value should be 0.0804 with a
.
rather than a,
.