Open lucventurini opened 3 weeks ago
PS: as a preventative apology, we realised this issue only today but I will not be reachable for a while after tomorrow. @nvolkova though should be available in the meantime.
Hi @lucventurini and @nvolkova. Thank you for getting in touch. Sorry for the late reply, I was away last week. I will see if I can help.
I hope this helps. Best of luck
Stefano
Good morning,
Our team is currently working to add Pelops to our bioinformatics pipeline. Specifically, we would like to use it within an internally developed tool that currently accepts VCFs and a form of specialised JSONs (different from the one Pelops outputs). We are also scoping out whether the Pelops output might need to be used by other products that strictly require VCF inputs.
In light of the above, we were wondering whether you have any plan to create utilities to output Pelops results into the VCF format. If not, we would still value any suggestions on how you would go about doing it (BND? CNV?).
Finally, as a related but potentially separate question, we were wondering whether Pelops will be integrated into the DRAGEN pipeline and, if it will be, how the output will be displayed - as JSONs (the current situation) or as part of the output VCF.
Many thanks. Tagging also @nvolkova who is following the work internally.