Does Pisces infer germline variants in tumor-only samples? - Githubissues

Illumina / Pisces

Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.

GNU General Public License v3.0

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Does Pisces infer germline variants in tumor-only samples? #63

Closed abalter closed 3 years ago

abalter commented 3 years ago

Does Pisces infer germline variants in tumor-only samples?

tamsen commented 3 years ago

nope. Pisces can run in 'germline' mode or "somatic' mode, which changes the default filter configurations. But its up to the user to sort out germline from somatic variants within the vcf.

abalter commented 3 years ago

Gotcha. Thank you.