Illumina Pisces issues - Githubissues

Illumina / Pisces

Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.

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issues

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Pisces input limits

#31 sbilobram opened 5 years ago
5
option to filter clustered snps

#30 ShannonDaddy opened 5 years ago
2
GATK IndelRealigner

#29 anitagh opened 5 years ago
1
Interval file format

#28 GCAT01 opened 5 years ago
1
No executable found matching command "dotnet-Pisces.dll Windows 10

#27 GCAT01 closed 5 years ago
2
Index was out of range. Must be non-negative and less than the size of the collection.

#26 HeXY0515 opened 5 years ago
2
Any suggestions on resource mapping?

#25 astewart-twist closed 5 years ago
2
no allele 2 AD

#24 ray1919 closed 5 years ago
1
CreateGenomeSizeFile_5.2.9.122.tar.gz

#23 saty89 opened 6 years ago
22
Invalid cigar '124I': indel must have anchor

#22 jungminchoilab closed 6 years ago
4
Release/pisces 5 2 9

#21 tamsen closed 6 years ago
0
high DP with low AD and missing GT

#20 ray1919 closed 6 years ago
3
some ALT contain <M>, what does it mean?

#19 ray1919 closed 6 years ago
1
Germline/somatic classification

#18 dancooke opened 6 years ago
8
Option to allow non-anchored indels?

#17 hydriniumh2 opened 6 years ago
8
how to get the names of support reads for a called variant?

#16 ShannonDaddy opened 6 years ago
1
strand bias for targeted amplicon sequencing

#15 ShannonDaddy opened 6 years ago
3
Truth sets and organization for Titration and RAS panel validation

#14 chapmanb opened 6 years ago
10
Unable to process: Found an unexpected BAM tag data type: [B] while looking for a tag (XD)

#13 ShannonDaddy opened 6 years ago
5
it's suitable for target panel sequencing ?

#12 WinterLi1993 opened 6 years ago
4
GenomeSize.xml needed for hs37d5 with PhiX

#11 chrausch opened 6 years ago
7
how to build hg19 reference genome on my own?

#10 ShannonDaddy closed 6 years ago
1
Visual studio shows red X's on source code folders in the test projects

#9 tamsen opened 6 years ago
0
Build fails if source code is in path containing spaces

#8 gwennberry opened 6 years ago
1
Should be compiled under a supported .NET core version

#7 jstaf closed 6 years ago
3
Misc/520 merge master branch

#6 gwennberry closed 7 years ago
0
can't find GenomePath

#5 ghost closed 7 years ago
2
homozygous allele frequency cutoff too high

#4 mcgml closed 7 years ago
4
Add Pisces 5.1.3.60 distributable

#3 gwennberry closed 7 years ago
0
Add Pisces 5.1.3.60 distributable

#2 gwennberry closed 7 years ago
0
Pisces requests FileCompression.dll in Unix system

#1 rmtsoa opened 8 years ago
7