Hi, I am the master student who ask a "simple" question before.
In my research plan, I am using NA12878 as truth set, download from here ENA(https://www.ebi.ac.uk/ena/data/view/ERR194147).
In this webpage, I can download both fastqs or BAM file. My question is, is the BAM file made from that fastqs? If yes, what is your trimming strategy?
Thank you
Hi, I am the master student who ask a "simple" question before. In my research plan, I am using NA12878 as truth set, download from here ENA(https://www.ebi.ac.uk/ena/data/view/ERR194147). In this webpage, I can download both fastqs or BAM file. My question is, is the BAM file made from that fastqs? If yes, what is your trimming strategy? Thank you