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Illumina / PrimateAI-3D

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Annotation software for PrimateAI-3D score #2

Open pirocv opened 1 year ago

pirocv commented 1 year ago

Hello,

Thanks for the great resource! Could you provide a pre-computed PrimateAI-3D score for all possible SNVs? Or can you make it available via some annotation software like VEP or ANNOVAR..., so I can annotate my variants at a time?

Best,

jungminchoilab commented 1 year ago

Dear Illumina,

Same request here. We are also interested in utilizing this complete pre-computed scores for in silico prediction of variant pathogenicity, as part of our ongoing research.

I want to assure you that we are committed to maintaining the highest academic integrity in our work. Consequently, any data obtained from your study will be used strictly for research purposes, and we will duly cite your paper in any ensuing publications that employ your data for our analysis.

Thank you for considering this request, and feel free to let me know if you need additional information from me. Your contribution will significantly aid our research.

Best, Jungmin

pfiziev commented 1 year ago

Hello,

Of course! Please, check https://primad.basespace.illumina.com/license for instructions to request academic or commercial license!

Thanks, Pete

jungminchoilab commented 1 year ago

Dear Pete,

Thank you for your swift reply, much appreciated.

I have actually attempted to contact Illumina as per the provided instructions on June 5th and June 9th, but have not yet received any response.

Could you suggest an alternative method to reach out to the one in charge and obtain the scores?

Best, Jungmin

pfiziev commented 1 year ago

Hello Jungmin,

Sorry for the experienced delay! There is currently no other way except going through this licensing process.

Thanks, Pete

victortoledo commented 1 year ago

Dear all,

I have entered the page mentioned (https://primad.basespace.illumina.com/license), but there is no information that I could use to request the license there. Can I get an update in how to do this proccess?

Thank you in advance, Victor

jungminchoilab commented 1 year ago

Dear Victor,

It appears that Illumina may have removed the instructions from the license page, so there's no need to concern yourself. I've tried reaching out to them three times, following the instructions that were previously provided, but unfortunately, I received no responses. I believe they might not be prepared for widespread public distribution at this time.

Best, Jungmin

KoalaQin commented 1 year ago

Hi, I wonder if any of you have heard from Illumina recently about the pre-computed PrimateAI-3D score. I also want to have access to this data. Thanks! Qin

victortoledo commented 1 year ago

Hello, Sadly, there is still no update.