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Illumina / REViewer

A tool for visualizing alignments of reads in regions containing tandem repeats
GNU General Public License v3.0
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Option to show which read bases align to N's or IUPAC bases within repeat unit #25

Open bw2 opened 2 years ago

bw2 commented 2 years ago

For LocusStructures that contain 'N' or IUPAC bases like 'ARRGG', it would nice to see which bases are actually present in the reads at those positions. For example

image

knowing which bases are underneath the N positions would make it easier to check consistency with parental genotypes.