Multiple FASTA files -> require import!
Preparing GenomeSize.xml for folder /media/2/CORN/data/Canvas/O/...
12/25/19 4:55 PM 1 Exception reported:
System.ArgumentException: An attempt was made to load two reference sequences with the same exact names (1)
at Common.IO.Sequencing.GenomeMetadata.AddReferenceSequence(String name, Int64 length, String fastaPath, FastaHeaderMetadata header, HashSet1& re ferenceNames, Int64 knownBaseLength) at Common.IO.Sequencing.GenomeMetadata.ImportFromFastaFiles(String inputFastaDirectory, String outputDirectory) at CreateGenomeSizeFile.Program.ProgramExecution() at CommandLine.Application.BaseApplication1.Execute().
ERROR: An attempt was made to load two reference sequences with the same exact names (1)
Stack trace:
at Common.IO.Sequencing.GenomeMetadata.AddReferenceSequence(String name, Int64 length, String fastaPath, FastaHeaderMetadata header, HashSet1& re ferenceNames, Int64 knownBaseLength) at Common.IO.Sequencing.GenomeMetadata.ImportFromFastaFiles(String inputFastaDirectory, String outputDirectory) at CreateGenomeSizeFile.Program.ProgramExecution() at CommandLine.Application.BaseApplication1.Execute()
12/25/19 4:55 PM 1 **** Ending *****
What triggers this error?
Removed spaces in chromosome names and it moved forward. Is this it?
dotnet /media/2/CORN/CreateGenomeSizeFile_5.2.10.49/CreateGenomeSizeFile.dll -g /media/2/CORN/data/zea_mays /Sequence/WholeGenomeFasta/ -s 'Zea mays (B73_RefGen_v4)' -o /media/2/CORN/data/Canvas/O/
CreateGenomeSizeFile Copyright (c) Illumina 2019 https://github.com/Illumina/Pisces 5.2.10.49
12/25/19 4:54 PM 1 ***** Starting ** 12/25/19 4:54 PM 1 Version: 5.2.10.49.
12/25/19 4:54 PM 1 Command-line arguments: . 12/25/19 4:54 PM 1 "-g /media/2/CORN/data/zea_mays/Sequence/WholeGenomeFasta/ -s Zea mays (B73_RefGen_v4) -o /media/2/CORN/data/Canvas/O/".
ERROR: An attempt was made to load two reference sequences with the same exact names (1)
Stack trace: at Common.IO.Sequencing.GenomeMetadata.AddReferenceSequence(String name, Int64 length, String fastaPath, FastaHeaderMetadata header, HashSet
1& re ferenceNames, Int64 knownBaseLength) at Common.IO.Sequencing.GenomeMetadata.ImportFromFastaFiles(String inputFastaDirectory, String outputDirectory) at CreateGenomeSizeFile.Program.ProgramExecution() at CommandLine.Application.BaseApplication1.Execute() 12/25/19 4:55 PM 1 **** Ending *****What triggers this error? Removed spaces in chromosome names and it moved forward. Is this it?