Closed jatintalwar closed 4 years ago
it still works for me.
try this: wget http://canvas-cnv-public.s3.amazonaws.com/hg19/WholeGenomeFasta/GenomeSize.xml
Look at that file for the correct format for GenomeSize.xml
Thanks @eroller
Worked for me with http(s). Something with the security profile for us internally was the issue. But thanks for the information on the xml file. I will modify the xml according to genome of interest for me.
Hello,
I am trying to use the canvas variant caller for WGS workflow but i am unable to download the required reference files from Amazon bucket as it seems to be not available.
http://canvas-cnv-public.s3.amazonaws.com/
Could you please take a look?
In addition, i have question regarding the reference files: I have a reference fasta file and want to create my own files that i can use for running Canvas. For example i created a GenomeSize.xml file which looks like this:
I am wondering if this work? if not, can you please share some information on how to generate a GenomeSize.xml that can be used for the specific genome.fa that we might have?
Thank you very much!