2020-04-28T10:42:37+02:00,ERROR: Job bedGraphToBigWig-coverage.bedgraph.1 failed with exit code 255. Job logs:
/ngs-data-sas/dev/bitools/bivip/bivipdecker/canvas_results/CanvasPedigreeCaller/Logging/bedGraphToBigWig-coverage.bedgraph.1.stdout
/ngs-data-sas/dev/bitools/bivip/bivipdecker/canvas_results/CanvasPedigreeCaller/Logging/bedGraphToBigWig-coverage.bedgraph.1.stderr
Job error message:
/ngs-data-sas/dev/bitools/bivip/bivipdecker/canvas_results/VisualizationTempTestSample/coverage.bedgraph is not case-sensitive sorted at line 1692856. Please use "sort -k1,1 -k2,2n" with LC_COLLATE=C, or bedSort and try again.
2020-04-28T10:42:37+02:00,ERROR: Exception caught in WorkDoerFactory. Cancelling all jobs. Exception:
One or more errors occurred. (Job bedGraphToBigWig-coverage.bedgraph.1 failed with exit code 255)
I am using dotnet v2.2.207, the latest version of canvas in SmallPedigree-WGS mode and I updated bedGraphToBigWig to v2.8.
Hi,
I am getting the following error:
2020-04-28T10:42:37+02:00,ERROR: Job bedGraphToBigWig-coverage.bedgraph.1 failed with exit code 255. Job logs: /ngs-data-sas/dev/bitools/bivip/bivipdecker/canvas_results/CanvasPedigreeCaller/Logging/bedGraphToBigWig-coverage.bedgraph.1.stdout /ngs-data-sas/dev/bitools/bivip/bivipdecker/canvas_results/CanvasPedigreeCaller/Logging/bedGraphToBigWig-coverage.bedgraph.1.stderr Job error message: /ngs-data-sas/dev/bitools/bivip/bivipdecker/canvas_results/VisualizationTempTestSample/coverage.bedgraph is not case-sensitive sorted at line 1692856. Please use "sort -k1,1 -k2,2n" with LC_COLLATE=C, or bedSort and try again. 2020-04-28T10:42:37+02:00,ERROR: Exception caught in WorkDoerFactory. Cancelling all jobs. Exception: One or more errors occurred. (Job bedGraphToBigWig-coverage.bedgraph.1 failed with exit code 255)
I am using dotnet v2.2.207, the latest version of canvas in SmallPedigree-WGS mode and I updated bedGraphToBigWig to v2.8.
Thank you very much for your help.
Kind regards Chris