Is the QQ value in the QUAL field of the VCF file by caller???

Illumina / hap.py

Haplotype VCF comparison tools

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Is the QQ value in the QUAL field of the VCF file by caller??? #125

Open BIjoy92 opened 4 years ago

BIjoy92 commented 4 years ago

First of all, thank you for the program that is useful for comparing.

I'm a little confused, but when I draw a PR curve, I use the QQ value as a threshod. Is the QQ value in the QUAL field of the VCF file by caller??? I guessed, but I want to know for sure.

Thanks.