The command given in introduction not working

Illumina / hap.py

Haplotype VCF comparison tools

Other

402 stars 122 forks source link

The command given in introduction not working #140

Closed aditya-sarkar441 closed 2 years ago

aditya-sarkar441 commented 3 years ago

$ ${HAPPY}/bin/hap.py \ example/happy/PG_NA12878_chr21.vcf.gz \ example/happy/NA12878_chr21.vcf.gz \ -f example/happy/PG_Conf_chr21.bed.gz \ -o test

@pkrusche This command is asking for a reference file. What is this reference file and is it present in the example folder ? Can you please look into this error ?

b-math commented 2 years ago

Hi.

In case you did not found it yet: I think it should be the file in example/chr21.fa. Just ran into the same issue today.

aditya-sarkar441 commented 2 years ago

Ok thanks!

edmundmiller commented 1 year ago

Still doesn't work because of #163