Open nvnieuwk opened 2 years ago
I can't get the versions of pre.py and hap.py:
pre.py
hap.py
$ hap.py --version Hap.py
and
$ pre.py --version usage: VCF preprocessor [-h] [--location LOCATIONS] [--pass-only] [--filters-only FILTERS_ONLY] [-R REGIONS_BEDFILE] [-T TARGETS_BEDFILE] [-L] [--no-leftshift] [--decompose] [-D] [--bcftools-norm] [--fixchr] [--no-fixchr] [--bcf] [--somatic] [--set-gt {half,hemi,het,hom,first}] [--filter-nonref] [--convert-gvcf-to-vcf] [--gender {male,female,auto,none}] [-v] [-r REF] [-w WINDOW] [--threads THREADS] [--logfile LOGFILE] [--verbose | --quiet] input output VCF preprocessor: error: too few arguments
I've tried this using the bioconda::hap.py=0.3.14 conda package and the quay.io/biocontainers/hap.py:0.3.14--py27h5c5a3ab_0 Docker image.
bioconda::hap.py=0.3.14
quay.io/biocontainers/hap.py:0.3.14--py27h5c5a3ab_0
Is anyone else having this problem? And is there any way I can fix this? Thanks!
I can't get the versions of
pre.py
andhap.py
:and
I've tried this using the
bioconda::hap.py=0.3.14
conda package and thequay.io/biocontainers/hap.py:0.3.14--py27h5c5a3ab_0
Docker image.Is anyone else having this problem? And is there any way I can fix this? Thanks!